Package index • DGrowthR

All functions

DGrowthR-class DGrowthR: This S4 class represents a DGrowthR model.

DGrowthRFromData(): Instiantiate a DGrowthR object.

alternative(): Accessor for the alternative slot

calculate_emp_p_value(): Calculate the Empirical p_value

clustering(): Clustering Function

estimate_fpca(): Functional Principal Component Analysis

estimate_growth_parameters(): Estimate growth parameters

estimate_umap(): Functional UMAP

example_metadata: Example DGrowthR Metadata

example_od_data: Example DGrowthR Optical Density Data

fit_predict_gp(): Fit at GP model and predict the mean process

gather_od_data(): Gather specific growth data from the DGrowthR object

growth_comparison(): Predict the values of the fitted model to an object.

growth_comparison_result(): Accessor for the result of growth comparison

lrt_statistic(): Accessor for the likelihood ratio test result

multiple_comparisons(): Multiple Comparisons

null(): Accessor for the null slot

perm_test(): Perform a permutation test for the DGrowthR object

perm_test_result(): Accessor for the perm_test_result slot

plot_fpca(): Plot FPCAs

plot_gp(): Plot Gaussian Process

plot_growth_comparison(): Plot Growth Comparison

plot_growth_curves(): Plot Optical Density

plot_likelihood_ratio(): Plot Likelihood Ratios

plot_od_difference(): Plot Optical Density over Time

plot_umap(): Plot UMAP components

preprocess_data(): Preprocess Growth Data

read_individual_plate(): Read individual growth plate

read_multiple_plates(): Read a collection growth plate data.

show(<DGrowthR>): Display a summary of the DGrowthR object